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parati

This is the released version of parati; for the devel version, see parati.

All versions

3.24 (devel), 3.23 (release)

Parental Allele Transmission Inference for Trio Genotype Data

DOI: 10.18129/B9.bioc.parati

Bioconductor version: Release (3.23)

Infers maternal and paternal transmitted and non-transmitted alleles from phased trio genotype data. The package supports SNP-level analyses of genetic nurture and transgenerational effects. It interoperates with Bioconductor VCF infrastructure through support for VariantAnnotation::VCF objects and returns R objects for downstream analysis.

Author: Jinyi Che [aut, cre]

Maintainer: Jinyi Che <chejinyi777 at gmail.com>

Citation (from within R, enter citation("parati")):

Jinyi Che. parati: Parental Allele Transmission Inference for Trio Genotype Data. doi:10.18129/B9.bioc.parati, R package version 1.0.0, https://bioconductor.org/packages/parati.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("parati")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("parati")

Details

Package Archives

Follow Installation instructions to use this package in your R session.