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panelcn.mops

This is the released version of panelcn.mops; for the devel version, see panelcn.mops.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

CNV detection tool for targeted NGS panel data


Bioconductor version: Release (3.23)

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid [aut], Gundula Povysil [aut, cre]

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Citation (from within R, enter citation("panelcn.mops")):

Verena Haunschmid, Gundula Povysil. panelcn.mops: CNV detection tool for targeted NGS panel data. doi:10.18129/B9.bioc.panelcn.mops, R package version 1.34.0, https://bioconductor.org/packages/panelcn.mops.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("panelcn.mops")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")
panelcn.mops: Manual for the R package PDF R Script
Reference ManualPDF
NEWSText

Details

biocViews CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection
Version1.34.0
In Bioconductor sinceBioC 3.6 (R-3.4) (9 years)
License LGPL (>= 2.0)
Depends R (>= 3.5), cn.mops, methods, utils, stats, graphics
Imports GenomicRanges, Rsamtools, IRanges, S4Vectors, Seqinfo, grDevices
System Requirements
URL
See More
Suggests knitr, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me CopyNumberPlots
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package panelcn.mops_1.34.0.tar.gz
Windows Binary (x86_64) panelcn.mops_1.34.0.zip
macOS Binary (big-sur-x86_64) panelcn.mops_1.34.0.tgz
macOS Binary (sonoma-arm64) panelcn.mops_1.34.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/panelcn.mops
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/panelcn.mops
Package Short Url https://bioconductor.org/packages/panelcn.mops/
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