pairedGSEA
Paired DGE and DGS analysis for gene set enrichment analysis
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
pairedGSEA makes it simple to run a paired Differential Gene Expression (DGE) and Differencital Gene Splicing (DGS) analysis. The package allows you to store intermediate results for further investiation, if desired. pairedGSEA comes with a wrapper function for running an Over-Representation Analysis (ORA) and functionalities for plotting the results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pairedGSEA")Details
| Maintainer | Søren Helweg Dam <sohdam@dtu.dk> |
| Author | Søren Helweg Dam [cre, aut] (ORCID: <https://orcid.org/0000-0002-9895-0930>), Lars Rønn Olsen [aut] (ORCID: <https://orcid.org/0000-0002-6725-7850>), Kristoffer Vitting-Seerup [aut] (ORCID: <https://orcid.org/0000-0002-6450-0608>) |
| License | MIT + file LICENSE |
| URL | https://github.com/shdam/pairedGSEA |
| Bug Reports | https://github.com/shdam/pairedGSEA/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneSetEnrichment, ImmunoOncology, Pathways, RNASeq, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/pairedGSEA/ |
Citation
From within R, enter citation("pairedGSEA"):
Søren Helweg Dam, Lars Rønn Olsen, Kristoffer Vitting-Seerup. pairedGSEA: Paired DGE and DGS analysis for gene set enrichment analysis. doi:10.18129/B9.bioc.pairedGSEA, R package version 1.12.0, https://bioconductor.org/packages/pairedGSEA.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | pairedGSEA_1.12.0.tar.gz |
| Windows binary (x86_64) | pairedGSEA_1.12.0.zip |
| macOS binary (arm64) | pairedGSEA_1.12.0.tgz |
| macOS binary (x86_64) | pairedGSEA_1.12.0.tgz |