netresponse

This is the released version of netresponse; for the devel version, see netresponse.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7

Functional Network Analysis

Bioconductor version: Release (3.23)

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("netresponse")):

Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen. netresponse: Functional Network Analysis. doi:10.18129/B9.bioc.netresponse, R package version 1.72.0, https://bioconductor.org/packages/netresponse.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")

microbiome R package	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription
Version	1.72.0
In Bioconductor since	BioC 2.7 (R-2.12) (16 years)
License	GPL (>=2)
Depends	R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods, minet, mclust, reshape2
Imports	ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer
System Requirements
URL	https://github.com/antagomir/netresponse
Bug Reports	https://github.com/antagomir/netresponse/issues

Suggests	knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netresponse_1.72.0.tar.gz
Windows Binary (x86_64)	netresponse_1.72.0.zip
macOS Binary (big-sur-x86_64)	netresponse_1.72.0.tgz
macOS Binary (sonoma-arm64)	netresponse_1.72.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netresponse
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netresponse
Package Short Url	https://bioconductor.org/packages/netresponse/
Package Downloads Report	Download Stats