netresponse
Functional Network Analysis
Bioconductor version: Release (3.19)
Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.
Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen
Maintainer: Leo Lahti <leo.lahti at iki.fi>
Citation (from within R, enter
citation("netresponse")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("netresponse")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netresponse")
microbiome R package | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription |
Version | 1.64.0 |
In Bioconductor since | BioC 2.7 (R-2.12) (14 years) |
License | GPL (>=2) |
Depends | R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods, minet, mclust, reshape2 |
Imports | ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer |
System Requirements | |
URL | https://github.com/antagomir/netresponse |
Bug Reports | https://github.com/antagomir/netresponse/issues |
See More
Suggests | knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | netresponse_1.64.0.tar.gz |
Windows Binary | netresponse_1.64.0.zip |
macOS Binary (x86_64) | netresponse_1.64.0.tgz |
macOS Binary (arm64) | netresponse_1.64.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/netresponse |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/netresponse |
Bioc Package Browser | https://code.bioconductor.org/browse/netresponse/ |
Package Short Url | https://bioconductor.org/packages/netresponse/ |
Package Downloads Report | Download Stats |