ncRNAtools

This is the released version of ncRNAtools; for the devel version, see ncRNAtools.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

An R toolkit for non-coding RNA

Bioconductor version: Release (3.23)

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Author: Lara Selles Vidal [cre, aut] ORCID: 0000-0003-2537-6824 , Rafael Ayala [aut] ORCID: 0000-0002-9332-4623 , Guy-Bart Stan [aut] ORCID: 0000-0002-5560-902X , Rodrigo Ledesma-Amaro [aut] ORCID: 0000-0003-2631-5898

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>

Citation (from within R, enter citation("ncRNAtools")):

Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro. ncRNAtools: An R toolkit for non-coding RNA. doi:10.18129/B9.bioc.ncRNAtools, R package version 1.22.2, https://bioconductor.org/packages/ncRNAtools.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncRNAtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncRNAtools")

rfaRm	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization
Version	1.22.2
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	GPL-3
Depends
Imports	httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors
System Requirements
URL
Bug Reports	https://github.com/LaraSellesVidal/ncRNAtools/issues

Suggests	knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ncRNAtools_1.22.2.tar.gz
Windows Binary (x86_64)	ncRNAtools_1.22.2.zip
macOS Binary (big-sur-x86_64)	ncRNAtools_1.22.2.tgz
macOS Binary (sonoma-arm64)	ncRNAtools_1.22.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ncRNAtools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ncRNAtools
Package Short Url	https://bioconductor.org/packages/ncRNAtools/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive