mspms
This is the released version of mspms; for the devel version, see mspms.
Tools for the analysis of MSP-MS data
Bioconductor version: Release (3.23)
This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.
Author: Charlie Bayne [aut, cre] 
Maintainer: Charlie Bayne <baynec2 at gmail.com>
citation("mspms")):Charlie Bayne. mspms: Tools for the analysis of MSP-MS data. doi:10.18129/B9.bioc.mspms, R package version 1.4.0, https://bioconductor.org/packages/mspms.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mspms")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mspms")| mspms_vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | MassSpectrometry, Preprocessing, Proteomics, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.4.0) |
| Imports | QFeatures, limma, SummarizedExperiment, magrittr, rlang, dplyr, purrr, stats, tidyr, stringr, ggplot2, ggseqlogo, heatmaply, readr, rstatix, tibble, ggpubr, imputeLCMD |
| System Requirements | |
| URL | https://github.com/baynec2/mspms |
| Bug Reports | https://github.com/baynec2/mspms/issues |
See More
| Suggests | knitr, testthat (>= 3.0.0), downloadthis, DT, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mspms_1.4.0.tar.gz |
| Windows Binary (x86_64) | mspms_1.4.0.zip |
| macOS Binary (big-sur-x86_64) | mspms_1.4.0.tgz |
| macOS Binary (sonoma-arm64) | mspms_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mspms |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mspms |
| Package Short Url | https://bioconductor.org/packages/mspms/ |
| Package Downloads Report | Download Stats |