microbiome

DOI: 10.18129/B9.bioc.microbiome    

Microbiome Analytics

Bioconductor version: Release (3.7)

Utilities for microbiome analysis.

Author: Leo Lahti [aut, cre], Sudarshan Shetty [aut]

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("microbiome")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("microbiome")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiome")

 

HTML R Script microbiome R package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, Metagenomics, Microbiome, Sequencing, Software, SystemsBiology
Version 1.2.1
License BSD_2_clause + file LICENSE
Depends R (>= 3.4.0), phyloseq, ggplot2
Imports dplyr, reshape2, stats, tidyr, utils, vegan
LinkingTo
Suggests BiocGenerics, BiocStyle, Cairo, knitcitations, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL http://microbiome.github.io/microbiome
BugReports https://github.com/microbiome/microbiome/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package microbiome_1.2.1.tar.gz
Windows Binary microbiome_1.2.1.zip
Mac OS X 10.11 (El Capitan) microbiome_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/microbiome
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/microbiome
Package Short Url http://bioconductor.org/packages/microbiome/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: