miaTime
This is the released version of miaTime; for the devel version, see miaTime.
Microbiome Time Series Analysis
Bioconductor version: Release (3.23)
The `miaTime` package provides tools for microbiome time series analysis based on (Tree)SummarizedExperiment infrastructure.
Author: Leo Lahti [aut] 
, Tuomas Borman [aut, cre] , Yagmur Simsek [aut], Sudarshan Shetty [ctb], Chouaib Benchraka [ctb], Muluh Muluh [ctb], Ali Hajj [ctb]
Maintainer: Tuomas Borman <tuomas.v.borman at utu.fi>
citation("miaTime")):Leo Lahti, Tuomas Borman, Yagmur Simsek. miaTime: Microbiome Time Series Analysis. doi:10.18129/B9.bioc.miaTime, R package version 1.2.0, https://bioconductor.org/packages/miaTime.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miaTime")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miaTime")| miaTime | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Microbiome, Sequencing, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.22 (R-4.5) (1 year) |
| License | Artistic-2.0 | file LICENSE |
| Depends | R (>= 4.5.0), mia |
| Imports | dplyr, methods, S4Vectors, SingleCellExperiment, stats, SummarizedExperiment, tidyr, TreeSummarizedExperiment |
| System Requirements | |
| URL | https://github.com/microbiome/miaTime |
| Bug Reports | https://github.com/microbiome/miaTime/issues |
See More
| Suggests | BiocStyle, devtools, ggplot2, knitr, lubridate, miaViz, rmarkdown, scater, testthat, vegan |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | LimROTS, mia, miaViz, OMA |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miaTime_1.2.0.tar.gz |
| Windows Binary (x86_64) | miaTime_1.2.0.zip |
| macOS Binary (big-sur-x86_64) | miaTime_1.2.0.tgz |
| macOS Binary (sonoma-arm64) | miaTime_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miaTime |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miaTime |
| Package Short Url | https://bioconductor.org/packages/miaTime/ |
| Package Downloads Report | Download Stats |