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miaDash

This is the released version of miaDash; for the devel version, see miaDash.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21

Dashboard for the interactive analysis and exploration of microbiome data


Bioconductor version: Release (3.23)

miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.

Author: Giulio Benedetti [aut, cre] ORCID iD ORCID: 0000-0002-8732-7692 , Akewak Jeba [ctb] ORCID iD ORCID: 0009-0007-1347-7552 , Leo Lahti [aut] ORCID iD ORCID: 0000-0001-5537-637X

Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>

Citation (from within R, enter citation("miaDash")):

Giulio Benedetti, Leo Lahti. miaDash: Dashboard for the interactive analysis and exploration of microbiome data. doi:10.18129/B9.bioc.miaDash, R package version 1.4.0, https://bioconductor.org/packages/miaDash.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miaDash")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miaDash")
miaDash HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews DataImport, GUI, Microbiome, ShinyApps, Software, Visualization
Version1.4.0
In Bioconductor sinceBioC 3.21 (R-4.5) (1.5 years)
License Artistic-2.0
Depends R (>= 4.4.0), iSEE (>= 2.19.4), shiny
Imports ape, bluster, htmltools, iSEEtree (>= 1.1.4), mia, rintrojs, scater, scuttle, shinydashboard, shinyjs, shinyWidgets, S4Vectors, SingleCellExperiment, SummarizedExperiment, TreeSummarizedExperiment, utils, vegan
System Requirements
URLhttps://github.com/microbiome/miaDash
Bug Reportshttps://github.com/microbiome/miaDash/issues
See More
Suggests BiocStyle, knitr, philr, remotes, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miaDash_1.4.0.tar.gz
Windows Binary (x86_64) miaDash_1.4.0.zip
macOS Binary (big-sur-x86_64) miaDash_1.4.0.tgz
macOS Binary (sonoma-arm64) miaDash_1.4.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/miaDash
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/miaDash
Package Short Url https://bioconductor.org/packages/miaDash/
Package Downloads ReportDownload Stats