messina

This is the released version of messina; for the devel version, see messina.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems

Bioconductor version: Release (3.23)

Messina is a collection of algorithms for constructing optimally robust single-gene classifiers, and for identifying differential expression in the presence of outliers or unknown sample subgroups. The methods have application in identifying lead features to develop into clinical tests (both diagnostic and prognostic), and in identifying differential expression when a fraction of samples show unusual patterns of expression.

Author: Mark Pinese [aut], Mark Pinese [cre], Mark Pinese [cph]

Maintainer: Mark Pinese <mpinese at ccia.org.au>

Citation (from within R, enter citation("messina")):

Mark Pinese. messina: Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems. doi:10.18129/B9.bioc.messina, R package version 1.48.0, https://bioconductor.org/packages/messina.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("messina")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("messina")

Using Messina	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, Classification, DifferentialExpression, GeneExpression, Software, Survival
Version	1.48.0
In Bioconductor since	BioC 2.14 (R-3.1) (12.5 years)
License	EPL (>= 1.0)
Depends	R (>= 3.1.0), survival (>= 2.37-4), methods
Imports	Rcpp (>= 0.11.1), plyr (>= 1.8), ggplot2 (>= 0.9.3.1), grid (>= 3.1.0), foreach (>= 1.4.1), graphics
System Requirements
URL

Suggests	knitr (>= 1.5), antiProfilesData (>= 0.99.2), Biobase (>= 2.22.0), BiocStyle
Linking To	Rcpp
Enhances	doMC (>= 1.3.3)
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	messina_1.48.0.tar.gz
Windows Binary (x86_64)	messina_1.48.0.zip
macOS Binary (big-sur-x86_64)	messina_1.48.0.tgz
macOS Binary (sonoma-arm64)	messina_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/messina
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/messina
Package Short Url	https://bioconductor.org/packages/messina/
Package Downloads Report	Download Stats