matchBox

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Bioconductor version: 3.23 · Package version: 1.54.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

DOI: 10.18129/B9.bioc.matchBox

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("matchBox")

Details

Maintainer	Luigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
Author	Luigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
License	Artistic-2.0
Source branch	RELEASE_3_23
Build report	Bioconductor build system, r-universe
biocViews	Annotation, Microarray, MultipleComparison, Software, Visualization
Package Short Url	https://bioconductor.org/packages/matchBox/

Citation

From within R, enter citation("matchBox"):

Luigi Marchionni, Anuj Gupta. matchBox: Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis. doi:10.18129/B9.bioc.matchBox, R package version 1.54.0, https://bioconductor.org/packages/matchBox.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Working with the matchBox package

Download

Follow the installation instructions to use this package in your R session.

Source package	matchBox_1.54.0.tar.gz
Windows binary (x86_64)	matchBox_1.54.0.zip
macOS binary (arm64)	matchBox_1.54.0.tgz
macOS binary (x86_64)	matchBox_1.54.0.tgz

Dependencies

Depends: R (>= 2.8.0)