maser

This is the released version of maser; for the devel version, see maser.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Mapping Alternative Splicing Events to pRoteins

Bioconductor version: Release (3.23)

This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.

Author: Diogo F.T. Veiga [aut, cre]

Maintainer: Diogo F.T. Veiga <diogof.veiga at gmail.com>

Citation (from within R, enter citation("maser")):

Diogo F.T. Veiga. maser: Mapping Alternative Splicing Events to pRoteins. doi:10.18129/B9.bioc.maser, R package version 1.30.0, https://bioconductor.org/packages/maser.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("maser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maser")

Introduction	HTML	R Script
Mapping protein features to splicing events	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AlternativeSplicing, Software, Transcriptomics, Visualization
Version	1.30.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	MIT + file LICENSE
Depends	R (>= 3.5.0), ggplot2, GenomicRanges
Imports	dplyr, rtracklayer, reshape2, Gviz, DT, Seqinfo, stats, utils, IRanges, methods, BiocGenerics, parallel, data.table
System Requirements
URL	https://github.com/DiogoVeiga/maser
Bug Reports	https://github.com/DiogoVeiga/maser/issues

Suggests	testthat, knitr, rmarkdown, BiocStyle, AnnotationHub
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	maser_1.30.0.tar.gz
Windows Binary (x86_64)	maser_1.30.0.zip
macOS Binary (big-sur-x86_64)	maser_1.30.0.tgz
macOS Binary (sonoma-arm64)	maser_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/maser
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/maser
Package Short Url	https://bioconductor.org/packages/maser/
Package Downloads Report	Download Stats