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logicFS

Identification of SNP Interactions


Bioconductor version: Release (3.18)

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender, Tobias Tietz

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("logicFS")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("logicFS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logicFS")
logicFS Manual PDF R Script
Reference Manual PDF

Details

biocViews Classification, Genetics, SNP, Software
Version 2.22.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL (>= 2)
Depends LogicReg, mcbiopi, survival
Imports graphics, methods, stats
System Requirements
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Suggests genefilter, siggenes
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package logicFS_2.22.0.tar.gz
Windows Binary logicFS_2.22.0.zip
macOS Binary (x86_64) logicFS_2.22.0.tgz
macOS Binary (arm64) logicFS_2.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/logicFS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/logicFS
Bioc Package Browser https://code.bioconductor.org/browse/logicFS/
Package Short Url https://bioconductor.org/packages/logicFS/
Package Downloads Report Download Stats