DOI: 10.18129/B9.bioc.ldblock    

data structures for linkage disequilibrium measures in populations

Bioconductor version: Release (3.8)

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ldblock", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script LD block import and manipulation
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biocViews Software
Version 1.12.1
In Bioconductor since BioC 3.2 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.1), methods, Homo.sapiens
Imports Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles(>= 1.13.6), BiocGenerics(>= 0.25.1)
Suggests RUnit, BiocGenerics, knitr
Depends On Me
Imports Me
Suggests Me gQTLstats
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package ldblock_1.12.1.tar.gz
Windows Binary ldblock_1.12.1.zip
Mac OS X 10.11 (El Capitan) ldblock_1.12.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ldblock
Package Short Url http://bioconductor.org/packages/ldblock/
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