ibh
Interaction Based Homogeneity for Evaluating Gene Lists
Bioconductor version: 3.23 · Package version: 1.60.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.
DOI: 10.18129/B9.bioc.ibh
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ibh")Details
| Maintainer | Kircicegi Korkmaz <e102771@ceng.metu.edu.tr> |
| Author | Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay. |
| License | GPL (>= 2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software |
| Package Short Url | https://bioconductor.org/packages/ibh/ |
Citation
From within R, enter citation("ibh"):
Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay. ibh: Interaction Based Homogeneity for Evaluating Gene Lists. doi:10.18129/B9.bioc.ibh, R package version 1.60.0, https://bioconductor.org/packages/ibh.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ibh_1.60.0.tar.gz |
| Windows binary (x86_64) | ibh_1.60.0.zip |
| macOS binary (arm64) | ibh_1.60.0.tgz |
| macOS binary (x86_64) | ibh_1.60.0.tgz |