iSEEindex

DOI: 10.18129/B9.bioc.iSEEindex  

iSEE extension for a landing page to a custom collection of data sets

Bioconductor version: Release (3.18)

This package provides an interface to any collection of data sets within a single iSEE web-application. The main functionality of this package is to define a custom landing page allowing app maintainers to list a custom collection of data sets that users can selected from and directly load objects into an iSEE web-application.

Author: Kevin Rue-Albrecht [aut, cre] , Thomas Sandmann [ctb] , Denali Therapeutics [fnd]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEindex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEindex")

 

HTML	R Script	Adding custom header and footer to the landing page
HTML	R Script	Implementing custom iSEEindex resources
HTML	R Script	Introduction to iSEEindex
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	SummarizedExperiment, SingleCellExperiment
Imports	BiocFileCache, DT, iSEE, methods, paws.storage, rintrojs, shiny, shinydashboard, shinyjs, stringr, urltools, utils
LinkingTo
Suggests	BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), yaml
SystemRequirements
Enhances
URL	https://github.com/iSEE/iSEEindex
BugReports	https://support.bioconductor.org/t/iSEEindex
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iSEEindex_1.0.0.tar.gz
Windows Binary	iSEEindex_1.0.0.zip
macOS Binary (x86_64)	iSEEindex_1.0.0.tgz
macOS Binary (arm64)	iSEEindex_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iSEEindex
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iSEEindex
Bioc Package Browser	https://code.bioconductor.org/browse/iSEEindex/
Package Short Url	https://bioconductor.org/packages/iSEEindex/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive