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hypeR

An R Package For Geneset Enrichment Workflows

Bioconductor version: 3.23 · Package version: 2.10.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

An R Package for Geneset Enrichment Workflows.

DOI: 10.18129/B9.bioc.hypeR

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

Details

MaintainerAndrew Chen <andrewdr@bu.edu>
AuthorAnthony Federico [aut], Andrew Chen [aut, cre], Stefano Monti [aut]
LicenseGPL-3 + file LICENSE
URLhttps://github.com/montilab/hypeR
Bug Reportshttps://github.com/montilab/hypeR/issues
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsAnnotation, GeneSetEnrichment, Pathways, Software
Package Short Url https://bioconductor.org/packages/hypeR/

Citation

From within R, enter citation("hypeR"):

Anthony Federico, Andrew Chen, Stefano Monti. hypeR: An R Package For Geneset Enrichment Workflows. doi:10.18129/B9.bioc.hypeR, R package version 2.10.0, https://bioconductor.org/packages/hypeR.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagehypeR_2.10.0.tar.gz
Windows binary (x86_64)hypeR_2.10.0.zip
macOS binary (arm64)hypeR_2.10.0.tgz
macOS binary (x86_64)hypeR_2.10.0.tgz
Dependencies

Depends: R (>= 3.6.0)

Imports: ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny, BiocStyle

Suggests: tidyverse, devtools, testthat, knitr