hypeR

DOI: 10.18129/B9.bioc.hypeR    

An R Package For Geneset Enrichment Workflows

Bioconductor version: Release (3.12)

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut, cre], Stefano Monti [aut]

Maintainer: Anthony Federico <anfed at bu.edu>

Citation (from within R, enter citation("hypeR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

 

HTML R Script hypeR
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.6.0
In Bioconductor since BioC 3.9 (R-3.6) (1.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6.0)
Imports ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny
LinkingTo
Suggests tidyverse, devtools, testthat, knitr
SystemRequirements
Enhances
URL https://github.com/montilab/hypeR
BugReports https://github.com/montilab/hypeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hypeR_1.6.0.tar.gz
Windows Binary hypeR_1.5.1.zip
macOS 10.13 (High Sierra) hypeR_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hypeR
Package Short Url https://bioconductor.org/packages/hypeR/
Package Downloads Report Download Stats

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