hypeR

DOI: 10.18129/B9.bioc.hypeR    

Hyper Enrichment

Bioconductor version: Release (3.9)

Geneset enrichment analysis based on hyper-geometric test.

Author: Anthony Federico <anfed at bu.edu>, Stefano Monti <smonti at bu.edu>

Maintainer: Anthony Federico <anfed at bu.edu>

Citation (from within R, enter citation("hypeR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

 

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Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.00.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License GPL-3 + file LICENSE
Depends R (>= 3.6.0)
Imports plotly, DT, magrittr, dplyr, openxlsx, msigdbr
LinkingTo
Suggests devtools, testthat, knitr, httr
SystemRequirements
Enhances
URL https://github.com/montilab/hypeR
BugReports https://github.com/montilab/hypeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hypeR_1.00.0.tar.gz
Windows Binary hypeR_1.00.0.zip
Mac OS X 10.11 (El Capitan) hypeR_1.00.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hypeR
Package Short Url http://bioconductor.org/packages/hypeR/
Package Downloads Report Download Stats

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