hammers
This is the released version of hammers; for the devel version, see hammers.
Utilities for scRNA-seq data analysis
Bioconductor version: Release (3.23)
hammers is a utilities suite for scRNA-seq data analysis compatible with both Seurat and SingleCellExperiment. It provides simple tools to address tasks such as retrieving aggregate gene statistics, finding and removing rare genes, performing representation analysis, computing the center of mass for the expression of a gene of interest in low-dimensional space, and calculating silhouette and cluster-normalized silhouette.
Author: Andrei-Florian Stoica [aut, cre] 
Maintainer: Andrei-Florian Stoica <andreistoica at foxmail.com>
citation("hammers")):Andrei-Florian Stoica. hammers: Utilities for scRNA-seq data analysis. doi:10.18129/B9.bioc.hammers, R package version 1.0.0, https://bioconductor.org/packages/hammers.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hammers")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hammers")| Getting started with CSOA | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression, MultipleComparison, SingleCell, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | cluster, dplyr, ggplot2, ggrepel, grDevices, henna, LISTO, liver, rlang, scLang, stats, text2vec |
| System Requirements | |
| URL | https://github.com/andrei-stoica26/hammers |
| Bug Reports | https://github.com/andrei-stoica26/hammers/issues |
See More
| Suggests | BiocStyle, knitr, qs2, rmarkdown, scater, scRNAseq, scuttle, testthat (>= 3.0.0), withr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | GSABenchmark |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hammers_1.0.0.tar.gz |
| Windows Binary (x86_64) | hammers_1.0.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | hammers_1.0.0.tgz |
| macOS Binary (sonoma-arm64) | hammers_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/hammers |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hammers |
| Package Short Url | https://bioconductor.org/packages/hammers/ |
| Package Downloads Report | Download Stats |