ginmappeR

Gene Identifier Mapper


Bioconductor version: Release (3.19)

Provides functionalities to translate gene or protein identifiers between state-of-art biological databases: CARD (), NCBI Protein, Nucleotide and Gene (), UniProt () and KEGG (). Also offers complementary functionality like NCBI identical proteins or UniProt similar genes clusters retrieval.

Author: Fernando Sola [aut, cre] , Daniel Ayala [aut] , Marina Pulido [aut] , Rafael Ayala [aut] , Lorena López-Cerero [aut] , Inma Hernández [aut] , David Ruiz [aut]

Maintainer: Fernando Sola <fsola at us.es>

Citation (from within R, enter citation("ginmappeR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ginmappeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ginmappeR")
ginmappeR HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Annotation, Genetics, KEGG, Software, ThirdPartyClient
Version 1.0.5
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License GPL-3 + file LICENSE
Depends
Imports KEGGREST, UniProt.ws, XML, rentrez, httr, utils, memoise, cachem, jsonlite, rvest
System Requirements
URL
See More
Suggests RUnit, BiocGenerics, markdown, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ginmappeR_1.0.5.tar.gz
Windows Binary (x86_64) ginmappeR_1.0.5.zip
macOS Binary (x86_64) ginmappeR_1.0.4.tgz
macOS Binary (arm64) ginmappeR_1.0.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/ginmappeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ginmappeR
Bioc Package Browser https://code.bioconductor.org/browse/ginmappeR/
Package Short Url https://bioconductor.org/packages/ginmappeR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.19 Source Archive