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Visualizing Phylomorphospaces using 'ggtree'

Bioconductor version: Release (3.19)

This package is a comprehensive visualization tool specifically designed for exploring phylomorphospace. It not only simplifies the process of generating phylomorphospace, but also enhances it with the capability to add graphic layers to the plot with grammar of graphics to create fully annotated phylomorphospaces. It also provide some utilities to help interpret evolutionary patterns.

Author: Guangchuang Yu [aut, cre, ths, cph] , Li Lin [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at>

Citation (from within R, enter citation("ggtreeSpace")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Introduction to ggtreeSpace HTML R Script
Reference Manual PDF


biocViews Annotation, Phylogenetics, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License Artistic-2.0
Imports interp, ape, dplyr, GGally, ggplot2, grid, ggtree, phytools, rlang, tibble, tidyr, tidyselect, stats
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Suggests knitr, prettydoc, rmarkdown, BiocStyle, testthat (>= 3.0.0)
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Follow Installation instructions to use this package in your R session.

Source Package ggtreeSpace_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64) ggtreeSpace_1.0.0.tgz
macOS Binary (arm64) ggtreeSpace_1.0.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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