ggtreeDendro

DOI: 10.18129/B9.bioc.ggtreeDendro    

Drawing 'dendrogram' using 'ggtree'

Bioconductor version: Release (3.16)

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

Author: Guangchuang Yu [aut, cre, cph] , Shuangbin Xu [ctb] , Chuanjie Zhang [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtreeDendro")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggtreeDendro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeDendro")

 

HTML R Script Visualizing Dendrogram using ggtree
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License Artistic-2.0
Depends ggtree(>= 3.5.3)
Imports ggplot2, stats, tidytree
LinkingTo
Suggests aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggtreeDendro_1.0.0.tar.gz
Windows Binary ggtreeDendro_1.0.0.zip
macOS Binary (x86_64) ggtreeDendro_1.0.0.tgz
macOS Binary (arm64) ggtreeDendro_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggtreeDendro
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggtreeDendro
Package Short Url https://bioconductor.org/packages/ggtreeDendro/
Package Downloads Report Download Stats

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