ggtreeDendro
Drawing 'dendrogram' using 'ggtree'
Bioconductor version: 3.23 · Package version: 1.14.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggtreeDendro")Details
| Maintainer | Guangchuang Yu <guangchuangyu@gmail.com> |
| Author | Guangchuang Yu [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-6485-8781>), Shuangbin Xu [ctb] (ORCID: <https://orcid.org/0000-0003-3513-5362>), Chuanjie Zhang [ctb] |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/ggtreeDendro/ |
Citation
From within R, enter citation("ggtreeDendro"):
Guangchuang Yu. ggtreeDendro: Drawing 'dendrogram' using 'ggtree'. doi:10.18129/B9.bioc.ggtreeDendro, R package version 1.14.0, https://bioconductor.org/packages/ggtreeDendro.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ggtreeDendro_1.14.0.tar.gz |
| Windows binary (x86_64) | ggtreeDendro_1.14.0.zip |
| macOS binary (arm64) | ggtreeDendro_1.14.0.tgz |
| macOS binary (x86_64) | ggtreeDendro_1.14.0.tgz |
Dependencies
Depends: ggtree (>= 3.5.3)
Imports: ggplot2, stats, tidytree, utils
Suggests: aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils