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flowDensity

Sequential Flow Cytometry Data Gating


Bioconductor version: Release (3.18)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mehrmalek at gmail.com>

Citation (from within R, enter citation("flowDensity")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
README Text
NEWS Text

Details

biocViews Bioinformatics, Cancer, CellBiology, Clustering, DataRepresentation, DensityGating, FlowCytData, FlowCytometry, Software, StemCell
Version 1.36.1
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends
Imports flowCore, graphics, flowViz(>= 1.42), car, polyclip, gplots, methods, stats, grDevices
System Requirements xml2, GNU make, C++11
URL
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me cyanoFilter, ddPCRclust, flowCut
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowDensity_1.36.1.tar.gz
Windows Binary flowDensity_1.36.1.zip (64-bit only)
macOS Binary (x86_64) flowDensity_1.36.1.tgz
macOS Binary (arm64) flowDensity_1.36.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowDensity
Bioc Package Browser https://code.bioconductor.org/browse/flowDensity/
Package Short Url https://bioconductor.org/packages/flowDensity/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive