flowCut

DOI: 10.18129/B9.bioc.flowCut    

Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Bioconductor version: Release (3.12)

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Author: Justin Meskas [cre, aut], Sherrie Wang [aut]

Maintainer: Justin Meskas <justinmeskas at gmail.com>

Citation (from within R, enter citation("flowCut")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowCut")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCut")

 

HTML R Script _**flowCut**_: Precise and Accurate Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
PDF   Reference Manual
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Details

biocViews CellBasedAssays, FlowCytometry, Preprocessing, QualityControl, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License Artistic-2.0
Depends R (>= 3.4), flowCore
Imports flowDensity(>= 1.13.1), Cairo, e1071, grDevices, graphics, stats, methods
LinkingTo
Suggests RUnit, BiocGenerics, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowCut_1.0.0.tar.gz
Windows Binary flowCut_1.0.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) flowCut_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowCut
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowCut
Package Short Url https://bioconductor.org/packages/flowCut/
Package Downloads Report Download Stats

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