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flowClust

Clustering for Flow Cytometry


Bioconductor version: Release (3.19)

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <greg at ozette.ai>

Maintainer: Greg Finak <greg at ozette.ai>, Mike Jiang <mike at ozette.ai>

Citation (from within R, enter citation("flowClust")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")
Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package HTML R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version 3.42.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License MIT
Depends R (>= 2.5.0)
Imports BiocGenerics, methods, Biobase, graph, flowCore, parallel
System Requirements GNU make
URL
See More
Suggests testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto, flowStats(>= 4.7.1)
Linking To
Enhances
Depends On Me
Imports Me cyanoFilter, flowTrans
Suggests Me BiocGenerics, flowTime, segmenTier
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowClust_3.42.0.tar.gz
Windows Binary flowClust_3.42.0.zip
macOS Binary (x86_64) flowClust_3.42.0.tgz
macOS Binary (arm64) flowClust_3.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowClust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowClust
Bioc Package Browser https://code.bioconductor.org/browse/flowClust/
Package Short Url https://bioconductor.org/packages/flowClust/
Package Downloads Report Download Stats