flowClust

This is the released version of flowClust; for the devel version, see flowClust.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Clustering for Flow Cytometry

Bioconductor version: Release (3.23)

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <greg at ozette.ai>

Maintainer: Greg Finak <greg at ozette.ai>, Mike Jiang <mike at ozette.ai>

Citation (from within R, enter citation("flowClust")):

Raphael Gottardo, Kenneth Lo, Greg Finak. flowClust: Clustering for Flow Cytometry. doi:10.18129/B9.bioc.flowClust, R package version 3.50.0, https://bioconductor.org/packages/flowClust.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")

Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package	HTML	R Script
Reference Manual	PDF
README	Text
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version	3.50.0
In Bioconductor since	BioC 2.2 (R-2.7) (18.5 years)
License	MIT
Depends	R (>= 2.5.0)
Imports	BiocGenerics, methods, Biobase, graph, flowCore, parallel
System Requirements	GNU make
URL

Suggests	testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto, flowStats (>= 4.7.1)
Linking To
Enhances
Depends On Me	flowMerge, flowTrans
Imports Me	CONFESS, cyanoFilter, flowTrans, openCyto
Suggests Me	BiocGenerics, flowTime, segmenTier
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowClust_3.50.0.tar.gz
Windows Binary (x86_64)	flowClust_3.50.0.zip
macOS Binary (big-sur-x86_64)	flowClust_3.50.0.tgz
macOS Binary (sonoma-arm64)	flowClust_3.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowClust
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowClust
Package Short Url	https://bioconductor.org/packages/flowClust/
Package Downloads Report	Download Stats