findIPs

Influential Points Detection for Feature Rankings


Bioconductor version: Release (3.19)

Feature rankings can be distorted by a single case in the context of high-dimensional data. The cases exerts abnormal influence on feature rankings are called influential points (IPs). The package aims at detecting IPs based on case deletion and quantifies their effects by measuring the rank changes (DOI:10.48550/arXiv.2303.10516). The package applies a novel rank comparing measure using the adaptive weights that stress the top-ranked important features and adjust the weights to ranking properties.

Author: Shuo Wang [aut, cre] , Junyan Lu [aut]

Maintainer: Shuo Wang <wangsures at foxmail.com>

Citation (from within R, enter citation("findIPs")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("findIPs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("findIPs")
Introduction to package findIPs HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, Regression, Software, Survival
Version 1.0.0
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License GPL-3
Depends graphics, R (>= 4.4.0)
Imports Biobase, BiocParallel, parallel, stats, SummarizedExperiment, survival, utils
System Requirements
URL https://github.com/ShuoStat/findIPs
Bug Reports https://github.com/ShuoStat/findIPs
See More
Suggests BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package findIPs_1.0.0.tar.gz
Windows Binary (x86_64) findIPs_1.0.0.zip
macOS Binary (x86_64) findIPs_1.0.0.tgz
macOS Binary (arm64) findIPs_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/findIPs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/findIPs
Bioc Package Browser https://code.bioconductor.org/browse/findIPs/
Package Short Url https://bioconductor.org/packages/findIPs/
Package Downloads Report Download Stats