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fCI

This is the released version of fCI; for the devel version, see fCI.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

DOI: 10.18129/B9.bioc.fCI

Bioconductor version: Release (3.23)

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

Author: Shaojun Tang

Maintainer: Shaojun Tang <tangshao2008 at gmail.com>

Citation (from within R, enter citation("fCI")):

Shaojun Tang. fCI: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics. doi:10.18129/B9.bioc.fCI, R package version 1.42.0, https://bioconductor.org/packages/fCI.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fCI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fCI")

Details

Package Archives

Follow Installation instructions to use this package in your R session.