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Cartesian plot and contingency test on 16S Microbial data

Bioconductor version: Release (3.18)

eudysbiome a package that permits to annotate the differential genera as harmful/harmless based on their ability to contribute to host diseases (as indicated in literature) or unknown based on their ambiguous genus classification. Further, the package statistically measures the eubiotic (harmless genera increase or harmful genera decrease) or dysbiotic(harmless genera decrease or harmful genera increase) impact of a given treatment or environmental change on the (gut-intestinal, GI) microbiome in comparison to the microbiome of the reference condition.

Author: Xiaoyuan Zhou, Christine Nardini

Maintainer: Xiaoyuan Zhou <zhouxiaoyuan at picb.ac.cn>

Citation (from within R, enter citation("eudysbiome")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

eudysbiome User Manual PDF R Script
Reference Manual PDF


biocViews Software
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends R (>= 3.1.0)
Imports plyr, Rsamtools, R.utils, Biostrings
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Follow Installation instructions to use this package in your R session.

Source Package eudysbiome_1.32.0.tar.gz
Windows Binary eudysbiome_1.32.0.zip
macOS Binary (x86_64) eudysbiome_1.32.0.tgz
macOS Binary (arm64) eudysbiome_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eudysbiome
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eudysbiome
Bioc Package Browser https://code.bioconductor.org/browse/eudysbiome/
Package Short Url https://bioconductor.org/packages/eudysbiome/
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