erccdashboard
Assess Differential Gene Expression Experiments with ERCC Controls
Bioconductor version: Release (3.19)
Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.
Author: Sarah Munro, Steve Lund
Maintainer: Sarah Munro <sarah.munro at gmail.com>
Citation (from within R, enter
citation("erccdashboard")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("erccdashboard")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("erccdashboard")
erccdashboard examples | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray |
Version | 1.38.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
License | GPL (>=2) |
Depends | R (>= 3.2), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0) |
Imports | edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr |
System Requirements | |
URL | https://github.com/munrosa/erccdashboard http://tinyurl.com/erccsrm |
Bug Reports | https://github.com/munrosa/erccdashboard/issues |
See More
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Linking To | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | erccdashboard_1.38.0.tar.gz |
Windows Binary | erccdashboard_1.38.0.zip |
macOS Binary (x86_64) | erccdashboard_1.38.0.tgz |
macOS Binary (arm64) | erccdashboard_1.38.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/erccdashboard |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/erccdashboard |
Bioc Package Browser | https://code.bioconductor.org/browse/erccdashboard/ |
Package Short Url | https://bioconductor.org/packages/erccdashboard/ |
Package Downloads Report | Download Stats |