epivizrStandalone

This is the released version of epivizrStandalone; for the devel version, see epivizrStandalone.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: Release (3.23)

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrStandalone")):

Hector Corrada Bravo, Jayaram Kancherla. epivizrStandalone: Run Epiviz Interactive Genomic Data Visualization App within R. doi:10.18129/B9.bioc.epivizrStandalone, R package version 1.40.0, https://bioconductor.org/packages/epivizrStandalone.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrStandalone")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrStandalone")

Introduction to epivizrStandalone	HTML
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GUI, Infrastructure, Software, Visualization
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.2.3), epivizr (>= 2.3.6), methods
Imports	git2r, epivizrServer, Seqinfo, BiocGenerics, GenomicFeatures, S4Vectors
System Requirements
URL

Suggests	testthat, knitr, rmarkdown, OrganismDbi (>= 1.13.9), Mus.musculus, Biobase, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	scTreeViz
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epivizrStandalone_1.40.0.tar.gz
Windows Binary (x86_64)	epivizrStandalone_1.40.0.zip
macOS Binary (big-sur-x86_64)	epivizrStandalone_1.40.0.tgz
macOS Binary (sonoma-arm64)	epivizrStandalone_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/epivizrStandalone
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epivizrStandalone
Package Short Url	https://bioconductor.org/packages/epivizrStandalone/
Package Downloads Report	Download Stats