To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epivizrStandalone")

In most cases, you don't need to download the package archive at all.

epivizrStandalone

 

   

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: Release (3.5)

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrStandalone")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epivizrStandalone")

Documentation

HTML Introduction to epivizrStandalone
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GUI, Infrastructure, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License MIT + file LICENSE
Depends R (>= 3.2.3), epivizr(>= 2.3.6), methods
Imports git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors
LinkingTo
Suggests testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me metavizr
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source epivizrStandalone_1.4.0.tar.gz
Windows Binary epivizrStandalone_1.4.0.zip
Mac OS X 10.11 (El Capitan) epivizrStandalone_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/epivizrStandalone/tree/release-3.5
Package Short Url http://bioconductor.org/packages/epivizrStandalone/
Package Downloads Report Download Stats

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