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epivizrStandalone

Run Epiviz Interactive Genomic Data Visualization App within R


Bioconductor version: Release (3.18)

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("epivizrStandalone")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrStandalone")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrStandalone")
Introduction to epivizrStandalone HTML
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GUI, Infrastructure, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License MIT + file LICENSE
Depends R (>= 3.2.3), epivizr(>= 2.3.6), methods
Imports git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors
System Requirements
URL
See More
Suggests testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me scTreeViz
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epivizrStandalone_1.30.0.tar.gz
Windows Binary epivizrStandalone_1.30.0.zip
macOS Binary (x86_64) epivizrStandalone_1.30.0.tgz
macOS Binary (arm64) epivizrStandalone_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/epivizrStandalone
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epivizrStandalone
Bioc Package Browser https://code.bioconductor.org/browse/epivizrStandalone/
Package Short Url https://bioconductor.org/packages/epivizrStandalone/
Package Downloads Report Download Stats