Welcome to the new bioconductor.org!

derfinderHelper

derfinder helper package


Bioconductor version: Release (3.18)

Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.

Author: Leonardo Collado-Torres [aut, cre] , Andrew E. Jaffe [aut] , Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("derfinderHelper")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderHelper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderHelper")
Introduction to derfinderHelper HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 3.2.2)
Imports IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2)
System Requirements
URL https://github.com/leekgroup/derfinderHelper
Bug Reports https://support.bioconductor.org/t/derfinderHelper
See More
Suggests sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr
Linking To
Enhances
Depends On Me
Imports Me derfinder
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package derfinderHelper_1.36.0.tar.gz
Windows Binary derfinderHelper_1.36.0.zip
macOS Binary (x86_64) derfinderHelper_1.36.0.tgz
macOS Binary (arm64) derfinderHelper_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/derfinderHelper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/derfinderHelper
Bioc Package Browser https://code.bioconductor.org/browse/derfinderHelper/
Package Short Url https://bioconductor.org/packages/derfinderHelper/
Package Downloads Report Download Stats