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customCMPdb

This is the released version of customCMPdb; for the devel version, see customCMPdb.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Customize and Query Compound Annotation Database


Bioconductor version: Release (3.23)

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")):

Yuzhu Duan, Thomas Girke. customCMPdb: Customize and Query Compound Annotation Database. doi:10.18129/B9.bioc.customCMPdb, R package version 1.22.0, https://bioconductor.org/packages/customCMPdb.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")
customCMPdb HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews AnnotationHubSoftware, Cheminformatics, Software
Version1.22.0
In Bioconductor sinceBioC 3.12 (R-4.0) (6 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache
System Requirements
URLhttps://github.com/yduan004/customCMPdb/
Bug Reportshttps://github.com/yduan004/customCMPdb/issues
See More
Suggests knitr, rmarkdown, testthat, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package customCMPdb_1.22.0.tar.gz
Windows Binary (x86_64) customCMPdb_1.22.0.zip
macOS Binary (big-sur-x86_64) customCMPdb_1.22.0.tgz
macOS Binary (sonoma-arm64) customCMPdb_1.22.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/customCMPdb
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/customCMPdb
Package Short Url https://bioconductor.org/packages/customCMPdb/
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