customCMPdb

Customize and Query Compound Annotation Database


Bioconductor version: Release (3.19)

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")
customCMPdb HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationHubSoftware, Cheminformatics, Software
Version 1.14.0
In Bioconductor since BioC 3.12 (R-4.0) (4 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache
System Requirements
URL https://github.com/yduan004/customCMPdb/
Bug Reports https://github.com/yduan004/customCMPdb/issues
See More
Suggests knitr, rmarkdown, testthat, BiocStyle
Linking To
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package customCMPdb_1.14.0.tar.gz
Windows Binary (x86_64) customCMPdb_1.14.0.zip
macOS Binary (x86_64) customCMPdb_1.14.0.tgz
macOS Binary (arm64) customCMPdb_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/customCMPdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/customCMPdb
Bioc Package Browser https://code.bioconductor.org/browse/customCMPdb/
Package Short Url https://bioconductor.org/packages/customCMPdb/
Package Downloads Report Download Stats