cn.farms
cn.FARMS - factor analysis for copy number estimation
Bioconductor version: 3.23 · Package version: 1.60.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cn.farms")Details
| Maintainer | Andreas Mitterecker <mitteran11@gmail.com> |
| Author | Andreas Mitterecker, Djork-Arne Clevert |
| License | LGPL (>= 2.0) |
| URL | http://www.bioinf.jku.at/software/cnfarms/cnfarms.html |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, Microarray, Software |
| Package Short Url | https://bioconductor.org/packages/cn.farms/ |
Citation
From within R, enter citation("cn.farms"):
Andreas Mitterecker, Djork-Arne Clevert. cn.farms: cn.FARMS - factor analysis for copy number estimation. doi:10.18129/B9.bioc.cn.farms, R package version 1.60.0, https://bioconductor.org/packages/cn.farms.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | cn.farms_1.60.0.tar.gz |
| Windows binary (x86_64) | cn.farms_1.60.0.zip |
| macOS binary (arm64) | cn.farms_1.60.0.tgz |
| macOS binary (x86_64) | cn.farms_1.60.0.tgz |
Dependencies
Depends: R (>= 3.0), Biobase, methods, ff, oligoClasses, snow
Imports: DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice