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clusterStab

Compute cluster stability scores for microarray data


Bioconductor version: Release (3.18)

This package can be used to estimate the number of clusters in a set of microarray data, as well as test the stability of these clusters.

Author: James W. MacDonald, Debashis Ghosh, Mark Smolkin

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Citation (from within R, enter citation("clusterStab")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clusterStab")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterStab")
clusterStab Overview PDF R Script
Reference Manual PDF

Details

biocViews Clustering, Software
Version 1.74.0
In Bioconductor since BioC 1.7 (R-2.2) (18.5 years)
License Artistic-2.0
Depends Biobase(>= 1.4.22), R (>= 1.9.0), methods
Imports
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Suggests fibroEset, genefilter
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clusterStab_1.74.0.tar.gz
Windows Binary clusterStab_1.74.0.zip
macOS Binary (x86_64) clusterStab_1.74.0.tgz
macOS Binary (arm64) clusterStab_1.74.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/clusterStab
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clusterStab
Bioc Package Browser https://code.bioconductor.org/browse/clusterStab/
Package Short Url https://bioconductor.org/packages/clusterStab/
Package Downloads Report Download Stats