borealis
Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution
Bioconductor version: 3.23 · Package version: 1.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("borealis")Details
| Maintainer | Garrett Jenkinson <gargar934@gmail.com> |
| Author | Garrett Jenkinson [aut, cre] (ORCID: <https://orcid.org/0000-0003-2548-098X>) |
| License | GPL-3 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, DNAMethylation, DifferentialMethylation, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/borealis/ |
Citation
From within R, enter citation("borealis"):
Garrett Jenkinson. borealis: Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution. doi:10.18129/B9.bioc.borealis, R package version 1.16.0, https://bioconductor.org/packages/borealis.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | borealis_1.16.0.tar.gz |
| Windows binary (x86_64) | borealis_1.16.0.zip |
| macOS binary (arm64) | borealis_1.16.0.tgz |
| macOS binary (x86_64) | borealis_1.16.0.tgz |
Dependencies
Depends: R (>= 4.2.0), Biobase
Imports: doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist, bsseq, methods, DSS, R.utils, utils, stats, ggplot2, cowplot, dplyr, rlang, GenomicRanges
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr, tidyr, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db