bioCancer

This is the released version of bioCancer; for the devel version, see bioCancer.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: Release (3.23)

This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("bioCancer")):

Karim Mezhoud. bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis. doi:10.18129/B9.bioc.bioCancer, R package version 1.40.0, https://bioconductor.org/packages/bioCancer.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bioCancer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioCancer")

bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization
Version	1.40.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	AGPL-3 \| file LICENSE
Depends	R (>= 4.1.0), radiant.data (>= 0.9.1), cBioPortalData, XML (>= 3.98)
Imports	R.oo, R.methodsS3, DT (>= 0.3), dplyr (>= 0.7.2), tidyr, shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, AnnotationDbi, shinythemes, Biobase, geNetClassifier, org.Hs.eg.db, org.Bt.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (<= 1.01), visNetwork, htmlwidgets, plyr, tibble, GO.db
System Requirements
URL	https://kmezhoud.github.io/bioCancer/
Bug Reports	https://github.com/kmezhoud/bioCancer/issues

Suggests	BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bioCancer_1.40.0.tar.gz
Windows Binary (x86_64)	bioCancer_1.40.0.zip
macOS Binary (big-sur-x86_64)	bioCancer_1.40.0.tgz
macOS Binary (sonoma-arm64)	bioCancer_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bioCancer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bioCancer
Package Short Url	https://bioconductor.org/packages/bioCancer/
Package Downloads Report	Download Stats