bigmelon

This is the released version of bigmelon; for the devel version, see bigmelon.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Illumina methylation array analysis for large experiments

Bioconductor version: Release (3.23)

Methods for working with Illumina arrays using gdsfmt.

Author: Tyler J. Gorrie-Stone [aut], Ayden Saffari [aut], Karim Malki [aut], Leonard C. Schalkwyk [cre, aut]

Maintainer: Leonard C. Schalkwyk <lschal at essex.ac.uk>

Citation (from within R, enter citation("bigmelon")):

Tyler J. Gorrie-Stone, Ayden Saffari, Karim Malki, Leonard C. Schalkwyk. bigmelon: Illumina methylation array analysis for large experiments. doi:10.18129/B9.bioc.bigmelon, R package version 1.38.0, https://bioconductor.org/packages/bigmelon.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bigmelon")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bigmelon")

The bigmelon Package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CpGIsland, DNAMethylation, DataImport, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.38.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	GPL-3
Depends	R (>= 3.3), wateRmelon (>= 1.25.0), gdsfmt (>= 1.0.4), methods, minfi (>= 1.21.0), Biobase, methylumi
Imports	stats, utils, GEOquery, graphics, BiocGenerics, illuminaio
System Requirements
URL

Suggests	BiocGenerics, RUnit, BiocStyle, minfiData, parallel, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bigmelon_1.38.0.tar.gz
Windows Binary (x86_64)	bigmelon_1.38.0.zip
macOS Binary (big-sur-x86_64)	bigmelon_1.38.0.tgz
macOS Binary (sonoma-arm64)	bigmelon_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bigmelon
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bigmelon
Package Short Url	https://bioconductor.org/packages/bigmelon/
Package Downloads Report	Download Stats