beachmat

DOI: 10.18129/B9.bioc.beachmat    

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: Release (3.7)

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <alun at wehi.edu.au>

Citation (from within R, enter citation("beachmat")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("beachmat")

Documentation

HTML R Script Linking to beachmat with C++ code from another package
HTML R Script Using beachmat to read data from R matrices in C++
HTML R Script Using beachmat to write data into R matrix objects
HTML R Script Using beachmat's helper functions in R
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.2.0
License GPL-3
Depends R (>= 3.5)
Imports utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.7.3), DelayedArray(>= 0.5.30), Rcpp (>= 0.12.14)
LinkingTo Rcpp, Rhdf5lib
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me DropletUtils, scater, scran
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beachmat_1.2.0.tar.gz
Windows Binary beachmat_1.2.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) beachmat_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/beachmat
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beachmat
Package Short Url http://bioconductor.org/packages/beachmat/
Package Downloads Report Download Stats

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