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beachmat.hdf5

This is the released version of beachmat.hdf5; for the devel version, see beachmat.hdf5.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

beachmat bindings for HDF5-backed matrices

DOI: 10.18129/B9.bioc.beachmat.hdf5

Bioconductor version: Release (3.23)

Extends beachmat to support initialization of tatami matrices from HDF5-backed arrays. This allows C++ code in downstream packages to directly call the HDF5 C/C++ library to access array data, without the need for block processing via DelayedArray. Some utilities are also provided for direct creation of an in-memory tatami matrix from a HDF5 file.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("beachmat.hdf5")):

Aaron Lun. beachmat.hdf5: beachmat bindings for HDF5-backed matrices. doi:10.18129/B9.bioc.beachmat.hdf5, R package version 1.10.0, https://bioconductor.org/packages/beachmat.hdf5.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beachmat.hdf5")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat.hdf5")

Details

Package Archives

Follow Installation instructions to use this package in your R session.