bayNorm
Single-cell RNA sequencing data normalization
Bioconductor version: 3.23 · Package version: 1.30.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
bayNorm is used for normalizing single-cell RNA-seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bayNorm")Details
| Maintainer | Wenhao Tang <wt215@ic.ac.uk> |
| Author | Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut] |
| License | GPL (>= 2) |
| URL | https://github.com/WT215/bayNorm |
| Bug Reports | https://github.com/WT215/bayNorm/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/bayNorm/ |
Citation
From within R, enter citation("bayNorm"):
Wenhao Tang, Franois Bertaux, Philipp Thomas, Claire Stefanelli, Malika Saint, Samuel Marguerat, Vahid Shahrezaei. bayNorm: Single-cell RNA sequencing data normalization. doi:10.18129/B9.bioc.bayNorm, R package version 1.30.0, https://bioconductor.org/packages/bayNorm.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | bayNorm_1.30.0.tar.gz |
| Windows binary (x86_64) | bayNorm_1.30.0.zip |
| macOS binary (arm64) | bayNorm_1.30.0.tgz |
| macOS binary (x86_64) | bayNorm_1.30.0.tgz |
Dependencies
Depends: R (>= 3.5)
Imports: Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, Matrix, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils
LinkingTo: Rcpp, RcppArmadillo, RcppProgress