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Quality metrics report for microarray data sets

Bioconductor version: Release (3.19)

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Mike Smith <mike.smith at>

Citation (from within R, enter citation("arrayQualityMetrics")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output PDF R Script
Introduction: microarray quality assessment with arrayQualityMetrics PDF R Script
Reference Manual PDF


biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel
Version 3.60.0
In Bioconductor since BioC 2.1 (R-2.6) (17 years)
License LGPL (>= 2)
Imports affy, affyPLM(>= 1.27.3), beadarray, Biobase, genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, utils, vsn(>= 3.23.3), XML, svglite
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Suggests ALLMLL, CCl4, BiocStyle, knitr
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Follow Installation instructions to use this package in your R session.

Source Package arrayQualityMetrics_3.60.0.tar.gz
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macOS Binary (x86_64) arrayQualityMetrics_3.60.0.tgz
macOS Binary (arm64) arrayQualityMetrics_3.60.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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