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alabaster.files

This is the released version of alabaster.files; for the devel version, see alabaster.files.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

Wrappers to Save Common File Formats

DOI: 10.18129/B9.bioc.alabaster.files

Bioconductor version: Release (3.23)

Save common bioinformatics file formats within the alabaster framework. This includes BAM, BED, VCF, bigWig, bigBed, FASTQ, FASTA and so on. We save and load additional metadata for each file, and we support linkage between each file and its corresponding index.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("alabaster.files")):

Aaron Lun. alabaster.files: Wrappers to Save Common File Formats. doi:10.18129/B9.bioc.alabaster.files, R package version 1.10.0, https://bioconductor.org/packages/alabaster.files.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.files")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.files")

Details

Package Archives

Follow Installation instructions to use this package in your R session.