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a4Base

Automated Affymetrix Array Analysis Base Package

Bioconductor version: 3.23 · Package version: 1.60.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

Base utility functions are available for the Automated Affymetrix Array Analysis set of packages.

DOI: 10.18129/B9.bioc.a4Base

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("a4Base")

Details

MaintainerLaure Cougnaud <laure.cougnaud@openanalytics.eu>
AuthorWillem Talloen [aut], Tine Casneuf [aut], An De Bondt [aut], Steven Osselaer [aut], Hinrich Goehlmann [aut], Willem Ligtenberg [aut], Tobias Verbeke [aut], Laure Cougnaud [cre]
LicenseGPL-3
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsMicroarray, Software
Package Short Url https://bioconductor.org/packages/a4Base/

Citation

From within R, enter citation("a4Base"):

Willem Talloen, Tine Casneuf, An De Bondt, Steven Osselaer, Hinrich Goehlmann, Willem Ligtenberg, Tobias Verbeke. a4Base: Automated Affymetrix Array Analysis Base Package. doi:10.18129/B9.bioc.a4Base, R package version 1.60.0, https://bioconductor.org/packages/a4Base.

Generated from the package metadata; it may differ from the package's own citation.

Download

Follow the installation instructions to use this package in your R session.

Source packagea4Base_1.60.0.tar.gz
Windows binary (x86_64)a4Base_1.60.0.zip
macOS binary (arm64)a4Base_1.60.0.tgz
macOS binary (x86_64)a4Base_1.60.0.tgz
Dependencies

Depends: a4Preproc, a4Core

Imports: methods, graphics, grid, Biobase, annaffy, mpm, genefilter, limma, multtest, glmnet, gplots

Suggests: Cairo, ALL, hgu95av2.db, nlcv

Enhances: gridSVG, JavaGD

Reverse dependencies

Depends On Me (1): a4

Suggests Me (2): epimutacions, MosaiClusteR