a4Base

This is the released version of a4Base; for the devel version, see a4Base.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

Automated Affymetrix Array Analysis Base Package

Bioconductor version: Release (3.23)

Base utility functions are available for the Automated Affymetrix Array Analysis set of packages.

Author: Willem Talloen [aut], Tine Casneuf [aut], An De Bondt [aut], Steven Osselaer [aut], Hinrich Goehlmann [aut], Willem Ligtenberg [aut], Tobias Verbeke [aut], Laure Cougnaud [cre]

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("a4Base")):

Willem Talloen, Tine Casneuf, An De Bondt, Steven Osselaer, Hinrich Goehlmann, Willem Ligtenberg, Tobias Verbeke. a4Base: Automated Affymetrix Array Analysis Base Package. doi:10.18129/B9.bioc.a4Base, R package version 1.60.0, https://bioconductor.org/packages/a4Base.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("a4Base")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, Software
Version	1.60.0
In Bioconductor since	BioC 2.8 (R-2.13) (15.5 years)
License	GPL-3
Depends	a4Preproc, a4Core
Imports	methods, graphics, grid, Biobase, annaffy, mpm, genefilter, limma, multtest, glmnet, gplots
System Requirements
URL

Suggests	Cairo, ALL, hgu95av2.db, nlcv
Linking To
Enhances	gridSVG, JavaGD
Depends On Me	a4
Imports Me
Suggests Me	epimutacions, MosaiClusteR
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	a4Base_1.60.0.tar.gz
Windows Binary (x86_64)	a4Base_1.60.0.zip
macOS Binary (big-sur-x86_64)	a4Base_1.60.0.tgz
macOS Binary (sonoma-arm64)	a4Base_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/a4Base
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/a4Base
Package Short Url	https://bioconductor.org/packages/a4Base/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive