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Wrench

Wrench normalization for sparse count data


Bioconductor version: Release (3.18)

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("Wrench")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Wrench")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Wrench")
Wrench HTML R Script
Reference Manual PDF

Details

biocViews Normalization, Sequencing, Software
Version 1.20.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports limma, matrixStats, locfit, stats, graphics
System Requirements
URL https://github.com/HCBravoLab/Wrench
Bug Reports https://github.com/HCBravoLab/Wrench/issues
See More
Suggests knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
Linking To
Enhances
Depends On Me
Imports Me metagenomeSeq
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Wrench_1.20.0.tar.gz
Windows Binary Wrench_1.20.0.zip
macOS Binary (x86_64) Wrench_1.20.0.tgz
macOS Binary (arm64) Wrench_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Wrench
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Wrench
Bioc Package Browser https://code.bioconductor.org/browse/Wrench/
Package Short Url https://bioconductor.org/packages/Wrench/
Package Downloads Report Download Stats