TreeAndLeaf

Displaying binary trees with focus on dendrogram leaves


Bioconductor version: Release (3.19)

The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.

Author: Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

Maintainer: Milena A. Cardoso <milenandreuzo at gmail.com>

Citation (from within R, enter citation("TreeAndLeaf")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeAndLeaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeAndLeaf")
TreeAndLeaf: an graph layout to dendrograms. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.16.0
In Bioconductor since BioC 3.11 (R-4.0) (4.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports RedeR(>= 1.40.4), igraph, ape
System Requirements
URL
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Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
Linking To
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Depends On Me
Imports Me
Suggests Me RedeR
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TreeAndLeaf_1.16.0.tar.gz
Windows Binary TreeAndLeaf_1.16.0.zip
macOS Binary (x86_64) TreeAndLeaf_1.16.0.tgz
macOS Binary (arm64) TreeAndLeaf_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TreeAndLeaf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TreeAndLeaf
Bioc Package Browser https://code.bioconductor.org/browse/TreeAndLeaf/
Package Short Url https://bioconductor.org/packages/TreeAndLeaf/
Package Downloads Report Download Stats