TreeAndLeaf
Displaying binary trees with focus on dendrogram leaves
Bioconductor version: Release (3.19)
The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.
Author: Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro
Maintainer: Milena A. Cardoso <milenandreuzo at gmail.com>
Citation (from within R, enter
citation("TreeAndLeaf")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TreeAndLeaf")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TreeAndLeaf")
TreeAndLeaf: an graph layout to dendrograms. | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization |
Version | 1.16.0 |
In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0) |
Imports | RedeR(>= 1.40.4), igraph, ape |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | RedeR |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TreeAndLeaf_1.16.0.tar.gz |
Windows Binary | TreeAndLeaf_1.16.0.zip |
macOS Binary (x86_64) | TreeAndLeaf_1.16.0.tgz |
macOS Binary (arm64) | TreeAndLeaf_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TreeAndLeaf |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TreeAndLeaf |
Bioc Package Browser | https://code.bioconductor.org/browse/TreeAndLeaf/ |
Package Short Url | https://bioconductor.org/packages/TreeAndLeaf/ |
Package Downloads Report | Download Stats |