TTMap
Two-Tier Mapper: a clustering tool based on topological data analysis
Bioconductor version: 3.23 · Package version: 1.34.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TTMap")Details
| Maintainer | Rachel Jeitziner <rachel.jeitziner@epfl.ch> |
| Author | Rachel Jeitziner |
| License | GPL-2 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software |
| Package Short Url | https://bioconductor.org/packages/TTMap/ |
Citation
From within R, enter citation("TTMap"):
Rachel Jeitziner. TTMap: Two-Tier Mapper: a clustering tool based on topological data analysis. doi:10.18129/B9.bioc.TTMap, R package version 1.34.0, https://bioconductor.org/packages/TTMap.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | TTMap_1.34.0.tar.gz |
| Windows binary (x86_64) | TTMap_1.34.0.zip |
| macOS binary (arm64) | TTMap_1.34.0.tgz |
| macOS binary (x86_64) | TTMap_1.34.0.tgz |
Dependencies
Depends: rgl, colorRamps
Imports: grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase