TDbasedUFE
Tensor Decomposition Based Unsupervised Feature Extraction
Bioconductor version: 3.23 · Package version: 1.12.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TDbasedUFE")Details
| Maintainer | Y-h. Taguchi <tag@granular.com> |
| Author | Y-h. Taguchi [aut, cre] (ORCID: <https://orcid.org/0000-0003-0867-8986>) |
| License | GPL-3 |
| URL | https://github.com/tagtag/TDbasedUFE |
| Bug Reports | https://github.com/tagtag/TDbasedUFE/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/TDbasedUFE/ |
Citation
From within R, enter citation("TDbasedUFE"):
Y-h. Taguchi. TDbasedUFE: Tensor Decomposition Based Unsupervised Feature Extraction. doi:10.18129/B9.bioc.TDbasedUFE, R package version 1.12.0, https://bioconductor.org/packages/TDbasedUFE.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | TDbasedUFE_1.12.0.tar.gz |
| Windows binary (x86_64) | TDbasedUFE_1.12.0.zip |
| macOS binary (arm64) | TDbasedUFE_1.12.0.tgz |
| macOS binary (x86_64) | TDbasedUFE_1.12.0.tgz |
Dependencies
Imports: GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Reverse dependencies
Imports Me (1): TDbasedUFEadv