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TCseq

This is the released version of TCseq; for the devel version, see TCseq.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Time course sequencing data analysis


Bioconductor version: Release (3.23)

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.

Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>

Maintainer: Mengjun Wu <minervajunjun at gmail.com>

Citation (from within R, enter citation("TCseq")):

Mengjun Wu, Lei Gu. TCseq: Time course sequencing data analysis. doi:10.18129/B9.bioc.TCseq, R package version 1.36.0, https://bioconductor.org/packages/TCseq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TCseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCseq")
TCseq Vignette PDF R Script
Reference ManualPDF

Details

biocViews ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization
Version1.36.0
In Bioconductor sinceBioC 3.5 (R-3.4) (9.5 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TCseq_1.36.0.tar.gz
Windows Binary (x86_64) TCseq_1.36.0.zip
macOS Binary (big-sur-x86_64) TCseq_1.36.0.tgz
macOS Binary (sonoma-arm64) TCseq_1.36.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/TCseq
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/TCseq
Package Short Url https://bioconductor.org/packages/TCseq/
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