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SELEX

Functions for analyzing SELEX-seq data


Bioconductor version: Release (3.18)

Tools for quantifying DNA binding specificities based on SELEX-seq data.

Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker

Maintainer: Harmen J. Bussemaker <hjb2004 at columbia.edu>

Citation (from within R, enter citation("SELEX")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SELEX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")
Motif Discovery with SELEX-seq PDF R Script
Reference Manual PDF

Details

biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL (>=2)
Depends rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports stats, utils
System Requirements Java (>= 1.5)
URL https://bussemakerlab.org/site/software/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SELEX_1.34.0.tar.gz
Windows Binary SELEX_1.34.0.zip
macOS Binary (x86_64) SELEX_1.34.0.tgz
macOS Binary (arm64) SELEX_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SELEX
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SELEX
Bioc Package Browser https://code.bioconductor.org/browse/SELEX/
Package Short Url https://bioconductor.org/packages/SELEX/
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