ResidualMatrix

This is the released version of ResidualMatrix; for the devel version, see ResidualMatrix.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Creating a DelayedMatrix of Regression Residuals

Bioconductor version: Release (3.23)

Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("ResidualMatrix")):

Aaron Lun. ResidualMatrix: Creating a DelayedMatrix of Regression Residuals. doi:10.18129/B9.bioc.ResidualMatrix, R package version 1.22.0, https://bioconductor.org/packages/ResidualMatrix.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ResidualMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ResidualMatrix")

Using the ResidualMatrix	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software
Version	1.22.0
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	GPL-3
Depends
Imports	methods, Matrix, S4Vectors, DelayedArray
System Requirements
URL	https://github.com/LTLA/ResidualMatrix
Bug Reports	https://github.com/LTLA/ResidualMatrix/issues

Suggests	testthat, BiocStyle, knitr, rmarkdown, BiocSingular
Linking To
Enhances
Depends On Me
Imports Me	batchelor
Suggests Me	alabaster.matrix, BiocSingular, chihaya, scran
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ResidualMatrix_1.22.0.tar.gz
Windows Binary (x86_64)	ResidualMatrix_1.22.0.zip
macOS Binary (big-sur-x86_64)	ResidualMatrix_1.22.0.tgz
macOS Binary (sonoma-arm64)	ResidualMatrix_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ResidualMatrix
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ResidualMatrix
Package Short Url	https://bioconductor.org/packages/ResidualMatrix/
Package Downloads Report	Download Stats