ResidualMatrix

DOI: 10.18129/B9.bioc.ResidualMatrix    

Creating a DelayedMatrix of Regression Residuals

Bioconductor version: Release (3.12)

Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("ResidualMatrix")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ResidualMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ResidualMatrix")

 

HTML R Script Using the ResidualMatrix
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends
Imports methods, Matrix, S4Vectors, DelayedArray
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown, BiocSingular
SystemRequirements
Enhances
URL https://github.com/LTLA/ResidualMatrix
BugReports https://github.com/LTLA/ResidualMatrix/issues
Depends On Me
Imports Me batchelor
Suggests Me BiocSingular
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ResidualMatrix_1.0.0.tar.gz
Windows Binary ResidualMatrix_1.0.0.zip
macOS 10.13 (High Sierra) ResidualMatrix_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ResidualMatrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ResidualMatrix
Package Short Url https://bioconductor.org/packages/ResidualMatrix/
Package Downloads Report Download Stats

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