DOI: 10.18129/B9.bioc.RedeR  

Interactive visualization and manipulation of nested networks

Bioconductor version: Release (3.18)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at>

Citation (from within R, enter citation("RedeR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script RedeR: hierarchical networks
PDF   Reference Manual
Text   NEWS


biocViews GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology
Version 2.6.0
In Bioconductor since BioC 2.9 (R-2.14) (12 years)
License GPL (>= 3)
Depends R (>= 4.0), methods
Imports igraph
Suggests BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf
SystemRequirements Java Runtime Environment (Java>= 11)
Depends On Me Fletcher2013b
Imports Me PANR, RTN, transcriptogramer, TreeAndLeaf
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package RedeR_2.6.0.tar.gz
Windows Binary
macOS Binary (x86_64) RedeR_2.6.0.tgz
macOS Binary (arm64) RedeR_2.6.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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